STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ79138.1Helix-turn-helix. (272 aa)    
Predicted Functional Partners:
SEP87645.1
Hypothetical protein.
 
     0.750
SEQ59936.1
DNA polymerase III, alpha subunit.
 
     0.719
SEP70895.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.574
SER12751.1
Amidohydrolase, PncC family; Belongs to the CinA family.
    
 0.574
SEQ79165.1
Patatin-like phospholipase.
 
     0.559
SEQ79112.1
Helix-turn-helix domain-containing protein.
       0.526
SEQ79192.1
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family.
       0.492
SEQ79212.1
Hypothetical protein.
       0.492
SEQ61202.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.487
SEP81627.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.441
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.