STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ93829.1Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (541 aa)    
Predicted Functional Partners:
rocD
Ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.975
SEQ93960.1
L-proline dehydrogenase.
 
 0.951
SEQ81730.1
Glycine dehydrogenase; Belongs to the GcvP family.
  
  
 0.937
SEQ52033.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
  
 
0.933
SEP77561.1
Aspartate aminotransferase.
   
 0.925
SEQ86790.1
Aspartate aminotransferase.
   
 0.925
SER09844.1
Aspartate aminotransferase.
   
 0.925
SEQ17975.1
Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.924
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 
 0.923
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.917
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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