STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER02901.1Starch-binding associating with outer membrane. (586 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.986
SER02871.1
Iron complex outermembrane recepter protein.
 
     0.892
SER02847.1
Phosphoinositide phospholipase C, Ca2+-dependent.
 
 
 
 0.872
SER02805.1
Calcineurin-like phosphoesterase.
  
   
 0.769
SEQ20465.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.703
SER02697.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.693
SEQ20495.1
Starch-binding associating with outer membrane.
  
     0.680
SEQ09062.1
Hypothetical protein.
  
     0.661
SEQ49790.1
Iron complex outermembrane recepter protein.
  
     0.505
SER09177.1
Hypothetical protein.
  
     0.483
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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