STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04647.1Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family. (459 aa)    
Predicted Functional Partners:
SER04590.1
Lysophospholipase L1.
 
  0.958
SER04619.1
Beta-galactosidase/beta-glucuronidase.
 
     0.912
SER04469.1
Lysophospholipase L1.
 
  0.887
SEP89851.1
Lysophospholipase L1.
 
  0.870
SER04559.1
Hypothetical protein.
 
 
  0.838
SER04500.1
Rhamnogalacturonan endolyase.
 
  
 0.797
SEP89666.1
Pectinesterase.
 
  
 0.794
SEP89827.1
Pectinesterase.
 
  
 0.793
SEP89745.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.773
SER03944.1
Protein of unknown function.
 
     0.767
Your Current Organism:
Chryseobacterium halperniae
NCBI taxonomy Id: 421072
Other names: C. halperniae, Chryseobacterium halperniae (Shaked et al. 2010) Hahnke et al. 2017, DSM 19921, Epilithonimonas lactis, Epilithonimonas lactis Shaked et al. 2010, Epilithonimonas sp. H1, LMG 24401, LMG:24401, strain H1
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