Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
IX38_08070Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)    
Predicted Functional Partners:
IX38_10120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.833
IX38_21800
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.684
IX38_08075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.675
IX38_06920
Phenylacetic acid degradation protein PaaN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.628
IX38_19940
Glycine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvP family.
    
 0.609
IX38_06855
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.582
IX38_21825
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.582
IX38_08080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IX38_01915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
IX38_13845
4'-phosphopantetheinyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.
   
  0.476
Your Current Organism:
Chryseobacterium luteum
NCBI taxonomy Id: 421531
Other names: C. luteum, Chryseobacterium luteum Behrendt et al. 2007 emend. Hahnke et al. 2016, Chryseobacterium luteum Behrendt et al. 2007 emend. Montero-Calasanz et al. 2014, DSM 18605, LMG 23785, LMG:23785, strain P 456/04
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