Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
IX38_08090TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)    
Predicted Functional Partners:
IX38_06380
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.855
IX38_22550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
IX38_11450
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
IX38_21305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
IX38_00955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
IX38_14110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
IX38_10455
Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
IX38_14920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
IX38_16290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
IX38_15385
Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
Your Current Organism:
Chryseobacterium luteum
NCBI taxonomy Id: 421531
Other names: C. luteum, Chryseobacterium luteum Behrendt et al. 2007 emend. Hahnke et al. 2016, Chryseobacterium luteum Behrendt et al. 2007 emend. Montero-Calasanz et al. 2014, DSM 18605, LMG 23785, LMG:23785, strain P 456/04
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