STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IX38_08090TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)    
Predicted Functional Partners:
IX38_22550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
IX38_11450
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
IX38_21305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
IX38_00955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
IX38_14110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.654
IX38_19710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.643
IX38_08690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.640
IX38_10455
Zn-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
IX38_01485
Ferric siderophore ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.624
IX38_14920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
Your Current Organism:
Chryseobacterium luteum
NCBI taxonomy Id: 421531
Other names: C. luteum, Chryseobacterium luteum Behrendt et al. 2007 emend. Hahnke et al. 2016, Chryseobacterium luteum Behrendt et al. 2007 emend. Montero-Calasanz et al. 2014, DSM 18605, LMG 23785, LMG:23785, strain P 456/04
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.