Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IX38_16005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)    
Predicted Functional Partners:
IX38_16010
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
IX38_15995
Sodium:proline symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.733
IX38_16015
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.730
IX38_16000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
IX38_15990
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.583
IX38_16020
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.546
prpE
Catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.443
IX38_02265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
IX38_22550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
IX38_03895
Deoxyuridine 5'-triphosphate nucleotidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.414
Your Current Organism:
Chryseobacterium luteum
NCBI taxonomy Id: 421531
Other names: C. luteum, Chryseobacterium luteum Behrendt et al. 2007 emend. Hahnke et al. 2016, Chryseobacterium luteum Behrendt et al. 2007 emend. Montero-Calasanz et al. 2014, DSM 18605, LMG 23785, LMG:23785, strain P 456/04
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