STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BTMF_LOCUS6467DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (751 aa)    
Predicted Functional Partners:
BTMF_LOCUS2624
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.974
BTMF_LOCUS1334
ERCC4 domain-containing protein.
    
 
 0.967
A0A0R3R071
PCNA_C domain-containing protein.
    
 
 0.963
BTMF_LOCUS6018
Uncharacterized protein.
   
 
 0.959
A0A158PT29
Uncharacterized protein.
    
 0.956
BTMF_LOCUS495
Small ubiquitin-related modifier.
   
 0.953
A0A0R3R0G9
Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.
  
 
 0.942
A0A0R3RD06
SP-RING-type domain-containing protein.
    
 
 0.935
BTMF_LOCUS854
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 
 0.932
A0A0R3QWC2
HRDC domain-containing protein.
   
 
 0.932
Your Current Organism:
Brugia timori
NCBI taxonomy Id: 42155
Other names: B. timori
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