STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS2659JmjC domain-containing protein. (778 aa)    
Predicted Functional Partners:
NLS_LOCUS7511
JmjC domain-containing protein.
   
 
 0.911
NLS_LOCUS2028
Uncharacterized protein.
    
 0.846
NLS_LOCUS5705
Uncharacterized protein.
   
 
 0.827
NLS_LOCUS498
SWIB domain-containing protein.
     
 0.810
NLS_LOCUS6985
Uncharacterized protein.
     
 0.810
NLS_LOCUS4675
Uncharacterized protein; Belongs to the actin family.
     
 0.803
NLS_LOCUS6363
BAF250_C domain-containing protein.
   
 0.780
NLS_LOCUS9434
ARID domain-containing protein.
   
 0.780
NLS_LOCUS815
Uncharacterized protein; Belongs to the protein kinase superfamily.
   
 
 0.757
NLS_LOCUS9051
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 
 0.757
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.