NLS_LOCUS915 protein (Litomosoides sigmodontis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NLS_LOCUS915

PID domain-containing protein. (294 aa)

Predicted Functional Partners:

NLS_LOCUS1464

0.631

NLS_LOCUS9965

0.580

NLS_LOCUS1252

0.561

NLS_LOCUS1836

0.561

NLS_LOCUS1250

0.561

NLS_LOCUS1253

0.561

NLS_LOCUS5767

0.560

NLS_LOCUS5744

0.550

NLS_LOCUS795

0.549

NLS_LOCUS9641

0.535

Your Current Organism:

Litomosoides sigmodontis

NCBI taxonomy Id: 42156
Other names: L. sigmodontis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NLS_LOCUS1250	NLS_LOCUS1252	A0A3P6SH89	A0A3P6S585	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1250	NLS_LOCUS1253	A0A3P6SH89	A0A3P6TY38	Uncharacterized protein.	Uncharacterized protein.	0.876
NLS_LOCUS1250	NLS_LOCUS1836	A0A3P6SH89	A0A3P6SDH8	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1250	NLS_LOCUS5744	A0A3P6SH89	A0A3P6UVP2	Uncharacterized protein.	Uncharacterized protein.	0.576
NLS_LOCUS1250	NLS_LOCUS795	A0A3P6SH89	A0A3P6SIP3	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.851
NLS_LOCUS1250	NLS_LOCUS915	A0A3P6SH89	A0A3P6SQL1	Uncharacterized protein.	PID domain-containing protein.	0.561
NLS_LOCUS1250	NLS_LOCUS9641	A0A3P6SH89	A0A3P7M6S5	Uncharacterized protein.	Uncharacterized protein.	0.974
NLS_LOCUS1250	NLS_LOCUS9965	A0A3P6SH89	A0A3P7LZV8	Uncharacterized protein.	Uncharacterized protein.	0.881
NLS_LOCUS1252	NLS_LOCUS1250	A0A3P6S585	A0A3P6SH89	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1252	NLS_LOCUS1253	A0A3P6S585	A0A3P6TY38	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1252	NLS_LOCUS1836	A0A3P6S585	A0A3P6SDH8	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1252	NLS_LOCUS5744	A0A3P6S585	A0A3P6UVP2	Uncharacterized protein.	Uncharacterized protein.	0.576
NLS_LOCUS1252	NLS_LOCUS795	A0A3P6S585	A0A3P6SIP3	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.857
NLS_LOCUS1252	NLS_LOCUS915	A0A3P6S585	A0A3P6SQL1	Uncharacterized protein.	PID domain-containing protein.	0.561
NLS_LOCUS1252	NLS_LOCUS9641	A0A3P6S585	A0A3P7M6S5	Uncharacterized protein.	Uncharacterized protein.	0.974
NLS_LOCUS1252	NLS_LOCUS9965	A0A3P6S585	A0A3P7LZV8	Uncharacterized protein.	Uncharacterized protein.	0.881
NLS_LOCUS1253	NLS_LOCUS1250	A0A3P6TY38	A0A3P6SH89	Uncharacterized protein.	Uncharacterized protein.	0.876
NLS_LOCUS1253	NLS_LOCUS1252	A0A3P6TY38	A0A3P6S585	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1253	NLS_LOCUS1836	A0A3P6TY38	A0A3P6SDH8	Uncharacterized protein.	Uncharacterized protein.	0.500
NLS_LOCUS1253	NLS_LOCUS5744	A0A3P6TY38	A0A3P6UVP2	Uncharacterized protein.	Uncharacterized protein.	0.576