STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS3961PKD_channel domain-containing protein. (615 aa)    
Predicted Functional Partners:
NLS_LOCUS2923
Uncharacterized protein.
   
  
 0.740
NLS_LOCUS7137
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
      
 0.735
NLS_LOCUS6108
Uncharacterized protein.
      
 0.730
NLS_LOCUS135
Pep3_Vps18 domain-containing protein.
      
 0.709
NLS_LOCUS7326
Uncharacterized protein.
      
 0.641
NLS_LOCUS6757
Uncharacterized protein.
      
 0.636
NLS_LOCUS2115
Uncharacterized protein.
      
 0.613
NLS_LOCUS8059
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
  
 0.611
NLS_LOCUS7078
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
  
 0.611
NLS_LOCUS3802
ANK_REP_REGION domain-containing protein.
     
 0.600
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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