NLS_LOCUS2212 protein (Litomosoides sigmodontis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NLS_LOCUS2212

Uncharacterized protein. (356 aa)

Predicted Functional Partners:

NLS_LOCUS212

0.999

NLS_LOCUS1302

0.999

NLS_LOCUS2570

0.999

NLS_LOCUS3437

0.999

NLS_LOCUS5808

0.999

NLS_LOCUS773

0.999

NLS_LOCUS8446

0.999

NLS_LOCUS2192

0.999

NLS_LOCUS294

0.998

NLS_LOCUS5253

0.998

Your Current Organism:

Litomosoides sigmodontis

NCBI taxonomy Id: 42156
Other names: L. sigmodontis

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NLS_LOCUS1302	NLS_LOCUS212	A0A3P6S9D9	A0A3P6S0Z7	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
NLS_LOCUS1302	NLS_LOCUS2192	A0A3P6S9D9	A0A3P6U9L2	Uncharacterized protein.	Uncharacterized protein.	0.999
NLS_LOCUS1302	NLS_LOCUS2212	A0A3P6S9D9	A0A3P6T175	Uncharacterized protein.	Uncharacterized protein.	0.999
NLS_LOCUS1302	NLS_LOCUS2570	A0A3P6S9D9	A0A3P6SQJ7	Uncharacterized protein.	Uncharacterized protein.	0.995
NLS_LOCUS1302	NLS_LOCUS294	A0A3P6S9D9	A0A3P6SJ29	Uncharacterized protein.	Uncharacterized protein.	0.995
NLS_LOCUS1302	NLS_LOCUS3437	A0A3P6S9D9	A0A3P6T1D2	Uncharacterized protein.	Uncharacterized protein.	0.999
NLS_LOCUS1302	NLS_LOCUS5253	A0A3P6S9D9	A0A3P6TJZ6	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.998
NLS_LOCUS1302	NLS_LOCUS5808	A0A3P6S9D9	A0A3P6TGR7	Uncharacterized protein.	Uncharacterized protein.	0.999
NLS_LOCUS1302	NLS_LOCUS773	A0A3P6S9D9	A0A3P6TTU6	Uncharacterized protein.	Uncharacterized protein.	0.999
NLS_LOCUS1302	NLS_LOCUS8446	A0A3P6S9D9	A0A3P6U204	Uncharacterized protein.	Ribosomal_S7 domain-containing protein.	0.999
NLS_LOCUS212	NLS_LOCUS1302	A0A3P6S0Z7	A0A3P6S9D9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
NLS_LOCUS212	NLS_LOCUS2192	A0A3P6S0Z7	A0A3P6U9L2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
NLS_LOCUS212	NLS_LOCUS2212	A0A3P6S0Z7	A0A3P6T175	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
NLS_LOCUS212	NLS_LOCUS2570	A0A3P6S0Z7	A0A3P6SQJ7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.997
NLS_LOCUS212	NLS_LOCUS294	A0A3P6S0Z7	A0A3P6SJ29	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.991
NLS_LOCUS212	NLS_LOCUS3437	A0A3P6S0Z7	A0A3P6T1D2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
NLS_LOCUS212	NLS_LOCUS5253	A0A3P6S0Z7	A0A3P6TJZ6	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.999
NLS_LOCUS212	NLS_LOCUS5808	A0A3P6S0Z7	A0A3P6TGR7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
NLS_LOCUS212	NLS_LOCUS773	A0A3P6S0Z7	A0A3P6TTU6	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.998
NLS_LOCUS212	NLS_LOCUS8446	A0A3P6S0Z7	A0A3P6U204	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S7 domain-containing protein.	0.998