STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS5750VWFA domain-containing protein. (4398 aa)    
Predicted Functional Partners:
NLS_LOCUS5302
RNase_H2-Ydr279 domain-containing protein.
   
 
 0.691
NLS_LOCUS2383
Uncharacterized protein.
   
 
 0.539
NLS_LOCUS8672
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
     
 0.529
NLS_LOCUS4436
Uncharacterized protein.
   
 
  0.527
NLS_LOCUS555
E3 ubiquitin-protein ligase.
    
 0.517
NLS_LOCUS1141
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.507
NLS_LOCUS4425
Uncharacterized protein; Belongs to the MAGUK family.
     
 0.488
NLS_LOCUS5371
V-SNARE coiled-coil homology domain-containing protein.
   
 
  0.488
NLS_LOCUS9542
Uncharacterized protein.
     
 0.488
NLS_LOCUS2750
Uncharacterized protein.
    
  0.486
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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