STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS3237Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (161 aa)    
Predicted Functional Partners:
NLS_LOCUS3238
ANK_REP_REGION domain-containing protein.
 
      0.900
NLS_LOCUS6213
C1_4 domain-containing protein.
 
      0.654
NLS_LOCUS1444
WD_REPEATS_REGION domain-containing protein.
    
 
 0.492
NLS_LOCUS1585
WD_REPEATS_REGION domain-containing protein.
    
 
 0.492
NLS_LOCUS6364
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
    
   0.467
NLS_LOCUS8983
SynN domain-containing protein.
    
 
 0.454
NLS_LOCUS8197
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.454
NLS_LOCUS8445
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.435
NLS_LOCUS7650
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
0.416
NLS_LOCUS1571
Peptidase_M28 domain-containing protein.
      
 0.414
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.