STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS5231Uncharacterized protein. (396 aa)    
Predicted Functional Partners:
NLS_LOCUS803
Eukaryotic translation initiation factor 3 subunit B.
   
 
 0.794
NLS_LOCUS5079
eIF2A domain-containing protein.
   
 
 0.794
NLS_LOCUS5433
AA_TRNA_LIGASE_II domain-containing protein.
   
 
 0.705
NLS_LOCUS7320
5'-3' exoribonuclease 1.
    
 
 0.625
NLS_LOCUS2670
Tr-type G domain-containing protein.
   
 
 0.568
NLS_LOCUS3070
RIO domain-containing protein.
   
   0.545
NLS_LOCUS6805
S1 motif domain-containing protein.
   
 
 0.542
NLS_LOCUS4131
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.531
NLS_LOCUS7080
Uncharacterized protein.
    
 
 0.522
NLS_LOCUS6129
Protein kinase domain-containing protein.
    
 
 0.506
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.