STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS9922Autophagy protein 5; Involved in autophagic vesicle formation. (193 aa)    
Predicted Functional Partners:
NLS_LOCUS6281
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
   
 0.999
NLS_LOCUS2539
WD_REPEATS_REGION domain-containing protein.
   
 0.999
NLS_LOCUS9003
Autophagy-related protein 3.
   
 0.996
NLS_LOCUS3636
Protein kinase domain-containing protein.
    
 
 0.984
NLS_LOCUS7094
Uncharacterized protein.
   
 0.975
NLS_LOCUS4388
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.972
NLS_LOCUS6568
Protein kinase domain-containing protein.
    
 
 0.956
NLS_LOCUS3369
Uncharacterized protein.
   
 0.941
NLS_LOCUS1141
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.929
NLS_LOCUS4272
Uncharacterized protein.
     
 0.920
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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