STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NLS_LOCUS9876NUC153 domain-containing protein. (537 aa)    
Predicted Functional Partners:
NLS_LOCUS713
WD_REPEATS_REGION domain-containing protein.
   
 
 0.991
NLS_LOCUS5732
Uncharacterized protein.
   
 
 0.991
NLS_LOCUS4586
Uncharacterized protein.
   
 
 0.990
NLS_LOCUS5791
BZIP domain-containing protein.
   
 
 0.989
NLS_LOCUS8338
WD_REPEATS_REGION domain-containing protein.
   
 
 0.989
NLS_LOCUS1555
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.987
NLS_LOCUS5082
Nucleolar protein 6.
   
 
 0.985
NLS_LOCUS180
Uncharacterized protein.
   
 
 0.985
NLS_LOCUS817
Uncharacterized protein.
   
 
 0.983
NLS_LOCUS1910
Uncharacterized protein.
   
   0.983
Your Current Organism:
Litomosoides sigmodontis
NCBI taxonomy Id: 42156
Other names: L. sigmodontis
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