STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOO_LOCUS5696H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (260 aa)    
Predicted Functional Partners:
NOO_LOCUS7931
PUA domain-containing protein.
   
 
 0.991
NOO_LOCUS6160
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.979
NOO_LOCUS8833
Uncharacterized protein.
   
 
 0.977
NOO_LOCUS7714
TruB_N domain-containing protein.
   
 
 0.966
NOO_LOCUS1632
Uncharacterized protein.
   
 
 0.928
NOO_LOCUS4697
CS domain-containing protein.
   
 
 0.854
NOO_LOCUS7626
Uncharacterized protein.
   
  
 0.787
NOO_LOCUS6840
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
 0.786
NOO_LOCUS709
Ribosomal_L7Ae domain-containing protein.
   
 
 0.760
NOO_LOCUS2925
Uncharacterized protein.
   
 
 0.760
Your Current Organism:
Onchocerca ochengi
NCBI taxonomy Id: 42157
Other names: O. ochengi
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