NOO_LOCUS12792 protein (Onchocerca ochengi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NOO_LOCUS12792

Uncharacterized protein. (127 aa)

Predicted Functional Partners:

A0A182ED72

0.965

NOO_LOCUS8038

0.965

NOO_LOCUS1095

0.949

NOO_LOCUS2250

0.949

NOO_LOCUS5890

0.949

NOO_LOCUS6898

0.949

A0A182EG16

0.949

NOO_LOCUS9195

0.949

NOO_LOCUS9197

0.949

NOO_LOCUS9307

0.949

Your Current Organism:

Onchocerca ochengi

NCBI taxonomy Id: 42157
Other names: O. ochengi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A182ED72	A0A182EG16	A0A182ED72	A0A182EG16	Uncharacterized protein.	Uncharacterized protein.	0.596
A0A182ED72	NOO_LOCUS1095	A0A182ED72	A0A182DZI2	Uncharacterized protein.	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	0.660
A0A182ED72	NOO_LOCUS12792	A0A182ED72	A0A182EX93	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A182ED72	NOO_LOCUS2250	A0A182ED72	A0A182E2P9	Uncharacterized protein.	Uncharacterized protein.	0.955
A0A182ED72	NOO_LOCUS5890	A0A182ED72	A0A182ECU4	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A182ED72	NOO_LOCUS6898	A0A182ED72	A0A182EFN1	Uncharacterized protein.	Uncharacterized protein.	0.596
A0A182ED72	NOO_LOCUS8038	A0A182ED72	A0A182EIV5	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A182ED72	NOO_LOCUS9195	A0A182ED72	A0A182EM52	Uncharacterized protein.	Ca_chan_IQ domain-containing protein.	0.655
A0A182ED72	NOO_LOCUS9197	A0A182ED72	A0A182EM54	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A182ED72	NOO_LOCUS9307	A0A182ED72	A0A182EMG1	Uncharacterized protein.	Uncharacterized protein.	0.655
A0A182EG16	A0A182ED72	A0A182EG16	A0A182ED72	Uncharacterized protein.	Uncharacterized protein.	0.596
A0A182EG16	NOO_LOCUS12792	A0A182EG16	A0A182EX93	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A182EG16	NOO_LOCUS8038	A0A182EG16	A0A182EIV5	Uncharacterized protein.	Uncharacterized protein.	0.596
NOO_LOCUS1095	A0A182ED72	A0A182DZI2	A0A182ED72	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.660
NOO_LOCUS1095	NOO_LOCUS12792	A0A182DZI2	A0A182EX93	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.949
NOO_LOCUS1095	NOO_LOCUS5890	A0A182DZI2	A0A182ECU4	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.516
NOO_LOCUS1095	NOO_LOCUS8038	A0A182DZI2	A0A182EIV5	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.660
NOO_LOCUS1095	NOO_LOCUS9307	A0A182DZI2	A0A182EMG1	Voltage-dependent L-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death; Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family.	Uncharacterized protein.	0.498
NOO_LOCUS12792	A0A182ED72	A0A182EX93	A0A182ED72	Uncharacterized protein.	Uncharacterized protein.	0.965
NOO_LOCUS12792	A0A182EG16	A0A182EX93	A0A182EG16	Uncharacterized protein.	Uncharacterized protein.	0.949