STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywtF_4LytR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)    
Predicted Functional Partners:
brpA_3
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.792
IQ63_02640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
IQ63_25770
Topoisomerase II; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
IQ63_00100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IQ63_00105
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
msrR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.506
IQ63_02095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
lrtA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
     0.462
IQ63_05925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
IQ63_05125
Peptidase M6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.