STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_00825Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
    
  0.894
IQ63_05270
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.856
IQ63_00330
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
IQ63_13005
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
IQ63_28090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
IQ63_33780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
IQ63_38380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.807
IQ63_00830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
IQ63_02610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.747
IQ63_29565
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.747
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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