STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcD_2NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)    
Predicted Functional Partners:
IQ63_01060
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
IQ63_01055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
fdnI
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.626
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 
 0.578
IQ63_01050
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
yidH
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IQ63_01080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IQ63_01090
Threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IQ63_01095
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
bbsG
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.