Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
IQ63_01150Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
acdA_3
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.923
IQ63_11165
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.912
eryA_13
Type I polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.875
IQ63_42010
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.847
IQ63_37595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.846
IQ63_37575
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.827
ppsA_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.822
eryA_12
Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.817
IQ63_08835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.813
IQ63_12635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.813
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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