STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_01300Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
IQ63_01305
Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.968
pgaB
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.870
IQ63_01315
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
IQ63_26880
Cellulose biosynthesis protein CelD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
IQ63_36225
Dolichol-phosphate mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.793
IQ63_24510
Dolichol-phosphate mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.785
IQ63_02015
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.774
IQ63_26875
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.732
hddC_2
Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.629
IQ63_07970
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.593
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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