STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrA_1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
yodB_1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.828
mshD_6
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
IQ63_01330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
IQ63_05750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family.
   
    0.797
IQ63_32160
Chromosome replication initiation inhibitor protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
   
    0.749
zur
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
   
  
 0.746
cdhR_6
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.745
IQ63_41635
N(G),N(G)-dimethylarginine dimethylaminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.646
cobB_1
NAD-dependent deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.610
msrR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.471
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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