STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_01865Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase A24 family. (252 aa)    
Predicted Functional Partners:
IQ63_31295
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.899
IQ63_03510
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.855
comEA
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.822
mqnE_2
Hypothetical protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2).
       0.805
IQ63_01875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.805
luxQ_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.790
IQ63_09690
Competence protein CoiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.753
aroE_3
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the shikimate dehydrogenase family.
  
    0.652
luxQ_1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.602
scpA_4
Chromosome segregation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.600
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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