STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smc_5Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)    
Predicted Functional Partners:
IQ63_02095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.947
IQ63_37115
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.731
IQ63_22235
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
IQ63_12145
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
IQ63_37120
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.683
IQ63_31425
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
IQ63_23220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.670
IQ63_15880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
IQ63_14665
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.665
IQ63_02100
methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.656
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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