STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_02595Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
pgdA_4
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
IQ63_02590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.746
IQ63_11815
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
engD_2
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.719
engD_1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 0.719
celA_2
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
xynAS9_2
Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.697
guaB_2
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.694
IQ63_09360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.645
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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