Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhbF_4Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2119 aa)    
Predicted Functional Partners:
tycC_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.992
IQ63_02690
Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
IQ63_37595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
0.947
lgrB
Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.914
srfAD
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.909
IQ63_37575
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.906
IQ63_20000
Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.903
IQ63_41840
Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.903
IQ63_34175
Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.902
IQ63_38850
Protein mbtH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.895
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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