STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_02890Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
IQ63_39720
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.603
IQ63_17300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
IQ63_02895
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
ligA
NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.529
IQ63_35700
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
IQ63_01235
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
IQ63_30445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
IQ63_27175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.440
spsI_3
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.436
IQ63_22725
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.428
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.