STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdaRTranscriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)    
Predicted Functional Partners:
fadM
Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.792
rocA1
1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
pucR_2
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.614
IQ63_35615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
IQ63_25380
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
oppF_2
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
IQ63_19865
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.483
IQ63_22180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
IQ63_25450
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
IQ63_04980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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