Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IQ63_03360SCP-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)    
Predicted Functional Partners:
acyP
Acylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
IQ63_07115
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
   
   0.698
IQ63_03370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.664
hxlR_4
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
smc_3
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
    0.631
xylE
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
       0.608
IQ63_02595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.497
pelA_1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.497
IQ63_18750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.497
IQ63_22530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.497
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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