Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
luxBLuciferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
ftsY
Cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.775
luxA_6
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
narB
Reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
  0.643
ssuD_3
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
ssuE
NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.566
ssuD_4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
limB_5
FMN-linked alkanal monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.551
IQ63_12230
Aminoacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
IQ63_12195
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
IQ63_12000
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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