STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_04020BldB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
sigD_4
RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.749
IQ63_03965
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
     
 0.740
IQ63_35975
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.734
eccB1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.720
IQ63_07780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
eccCa1
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.666
IQ63_03955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
mngR_4
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.607
IQ63_27270
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.607
IQ63_17340
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.