STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hapE_1Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)    
Predicted Functional Partners:
IQ63_04195
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.911
mlhB_2
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.869
IQ63_02445
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.857
nlhH_2
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.784
nlhH_5
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.781
fadJ_2
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.733
nlhH_1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.710
atpA
ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.668
IQ63_27300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
IQ63_17295
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.660
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.