Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
marR_3MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
mprA_4
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.716
IQ63_13970
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.711
tam
Trans-aconitate methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
     
 0.673
IQ63_04550
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
IQ63_04555
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
fabG_3
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
IQ63_04565
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.411
IQ63_26575
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.400
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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