STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_04845Lysine biosynthesis protein LysW; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)    
Predicted Functional Partners:
lysX_4
30S ribosomal protein S6 modification protein RimK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.
       0.876
argC_3
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.837
IQ63_04835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.837
btrR
Pyridoxal phosphate-dependent enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.
       0.745
dapE_5
Acetyl-lysine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.720
dxs_5
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
tktB
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
IQ63_04800
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
IQ63_04795
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
bacD_4
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.441
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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