STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgJOxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
IQ63_29555
2-keto-myo-inositol dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.918
IQ63_05230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0303 family.
 
    0.901
iolE_3
2-keto-myo-inositol dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.880
iolE_4
2-keto-myo-inositol dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.880
iolG_3
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
  
  0.876
iolG_2
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
  
  
  0.870
nagC_7
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.801
idhA_1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.801
idhA_2
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.787
suhB_3
Inositol-phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the inositol monophosphatase superfamily.
 
  
 0.703
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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