STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_06235Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
mlr_1
Sarcosine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
   
  0.783
bchI
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.753
ppsA_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.725
IQ63_40875
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.685
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
  0.677
prpE
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.659
rebG
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.648
IQ63_00830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
IQ63_02745
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.609
IQ63_28930
Nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.609
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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