STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_06830Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
drrA_10
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.931
IQ63_06835
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.870
IQ63_06820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.723
IQ63_28455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
IQ63_37755
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
IQ63_31590
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
IQ63_35955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
IQ63_04140
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
IQ63_36330
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.665
IQ63_41535
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.