STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_07150Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)    
Predicted Functional Partners:
IQ63_07160
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
IQ63_07145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
IQ63_14160
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
pbpA_2
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.573
pbpA_3
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.535
lppS_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
lppS_4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
IQ63_17675
Colicin V synthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.495
lppS_5
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
lppS_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.