STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceC_4Tellurium resistance protein terZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
yceD_7
Export associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.892
yceD_9
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.843
IQ63_30365
Tellurium resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.814
IQ63_30355
ATP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
IQ63_23365
Stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
IQ63_37085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
IQ63_16850
Tellurite resistance TerB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.760
IQ63_44045
TerD-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.532
IQ63_41920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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