STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_07890Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)    
Predicted Functional Partners:
IQ63_05140
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.944
IQ63_07895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.939
IQ63_07875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.927
IQ63_26640
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.863
IQ63_43575
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.849
aspA-2
Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.833
IQ63_07885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.810
IQ63_07880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
sdhA
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.759
yecD
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.731
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.