STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_08010Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
IQ63_08015
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.901
IQ63_08005
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.876
IQ63_08020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
IQ63_08025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.625
priA_1
Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
    
 
 0.463
IQ63_08160
Helicase DnaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.455
dnaB_2
Helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
   
 
 0.455
IQ63_07255
TIR protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
IQ63_07250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
IQ63_08040
Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.431
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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