Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_08095Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
IQ63_08090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
IQ63_08100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.667
IQ63_08125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.640
IQ63_08115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.549
IQ63_08120
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
IQ63_28965
Growth inhibitor PemK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.469
IQ63_08085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
IQ63_38170
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
IQ63_08110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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