STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lip1_1Triacylglycerol lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)    
Predicted Functional Partners:
xynAS9_1
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.757
IQ63_37595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.604
gloA_2
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.547
IQ63_09220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.509
IQ63_09225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.490
comA
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.466
lipO_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
IQ63_43425
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.430
IQ63_17880
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.427
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.