STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nisC_2Lanthionine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)    
Predicted Functional Partners:
IQ63_09510
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
IQ63_09505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
IQ63_38940
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
IQ63_09520
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
IQ63_29890
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
IQ63_30415
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
IQ63_38480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
IQ63_36490
hydroxylacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
IQ63_26125
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
IQ63_05300
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.464
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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