STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_09705NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)    
Predicted Functional Partners:
IQ63_44605
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
IQ63_09700
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.620
IQ63_03680
NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
IQ63_40895
NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.581
IQ63_05270
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.576
mmsA
Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.499
novR_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.407
fucA_1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.407
novR_2
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.407
mtnB
Fructose-bisphosphate aldolase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
    
  0.407
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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