STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmfA2Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa)    
Predicted Functional Partners:
cfiB
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.828
IQ63_07115
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
   
   0.818
dmfA1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.727
IQ63_10920
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.529
IQ63_13155
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.492
IQ63_02595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
pelA_1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
IQ63_18750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
IQ63_22530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
IQ63_27495
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.