STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_105653-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
IQ63_12750
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.752
IQ63_39670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.741
clpP2_2
Clp protease ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.721
clpP2_1
Clp protease ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.721
IQ63_03590
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.657
IQ63_30095
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.636
IQ63_35905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.622
IQ63_10570
Epoxide hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.604
IQ63_33855
Deaminase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.595
IQ63_10545
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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